- Class: 3
- Architecture: 3.30:2-Layer Sandwich
- Topology: 3.30.760:RNA Cap, Translation Initiation Factor Eif4e
- Homology: 3.30.760.10:RNA Cap, Translation Initiation Factor Eif4e
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1ap8 | [A] | [A] | [A] | NOTAPPLICABLE. | M7G:7N-METHYL-8-HYDROGUANOSINE-5___sq___-DIPHOSPHATE | |||
1ej1 | [A] | [A] | [A] | 2.2 | M7G:7N-METHYL-8-HYDROGUANOSINE-5___sq___-DIPHOSPHATE | |||
1ej4 | [A][a] | [A][a] | [A][a] | 2.25 | M7G:7N-METHYL-8-HYDROGUANOSINE-5___sq___-DIPHOSPHATE | |||
1ejh | [A][a] | [A][a] | [A][a] | 2.2 | M7G:7N-METHYL-8-HYDROGUANOSINE-5___sq___-DIPHOSPHATE | |||
1ipb | [A] | [A] | [A] | 2 | GTA:P1-7-METHYLGUANOSINE-P3-ADENOSINE-5___sq___,5___sq___-TRIPHOSPHATE | |||
1ipc | [A] | [A] | [A] | 2 | MGP:7-METHYL-GUANOSINE-5___sq___-TRIPHOSPHATE | |||
1l8b | [A] | [A] | [A] | 1.8 | MGP:7-METHYL-GUANOSINE-5___sq___-TRIPHOSPHATE | |||
1rf8 | [AB] | [AB] | [AB] | NOTAPPLICABLE. | M7G:7N-METHYL-8-HYDROGUANOSINE-5___sq___-DIPHOSPHATE MTN:S-[(1-OXYL-2,2,5,5-TETRAMETHYL-2,5-DIHYDRO-1H-PYRROL-3-YL)METHYL] METHANESULFONOTHIOATE | |||
1wkw | [A][a] | [A][a] | [A][a] | 2.1 | GTA:P1-7-METHYLGUANOSINE-P3-ADENOSINE-5___sq___,5___sq___-TRIPHOSPHATE | |||
1ztp | [A] | [A] | [A] | 2.5 | MSE:SELENOMETHIONINE | |||
2gpq | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
2idr | [A] | [A] | [A] | 1.85 | ||||
2idv | [A] | [A] | [A] | 2.3 | M7G:7N-METHYL-8-HYDROGUANOSINE-5___sq___-DIPHOSPHATE | |||
2jgb | [A][a] | [A][a] | [A][a] | 1.7 | MGT:7N-METHYL-8-HYDROGUANOSINE-5___sq___-TRIPHOSPHATE | |||
2jgc | [A][a] | [A][a] | [A][a] | 2.4 | ||||
2q4k | [A] | [A] | [A] | 2.5 | MSE:SELENOMETHIONINE | |||
2v8w | [A][a] | [A][a] | [A][a] | 2.3 | MGO:[[(2R,3S,4R,5R)-5-(6-AMINO-3-METHYL-4-OXO-5H-IMIDAZO[4,5-C]PYRIDIN-1-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL]PHOSPHONO HYDROGEN PHOSPHATE | |||
2v8x | [A][a] | [A][a] | [A][a] | 2.3 | MGQ:7-BENZYL GUANINE MONOPHOSPHATE | |||
2v8y | [A][a] | [A][a] | [A][a] | 2.1 | MGV:P-FLUORO-7-BENZYL GUANINE MONOPHOSPHATE | |||
2w97 | [AB][a2] | [AB][a2] | [A2][a2] | 2.29 | GOL:GLYCEROL MGO:[[(2R,3S,4R,5R)-5-(6-AMINO-3-METHYL-4-OXO-5H-IMIDAZO[4,5-C]PYRIDIN-1-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE PGE:TRIETHYLENE GLYCOL SO4:SULFATE ION | |||
2wmc | [A] | [A] | [A] | 2.2 | MGP:7-METHYL-GUANOSINE-5___sq___-TRIPHOSPHATE | |||
3am7 | [A][a] | [A][a] | [A][a] | 2.2 | MGP:7-METHYL-GUANOSINE-5___sq___-TRIPHOSPHATE | |||
3hxg | [A][a] | [A][a] | [A][a] | 2.1 | GTA:P1-7-METHYLGUANOSINE-P3-ADENOSINE-5___sq___,5___sq___-TRIPHOSPHATE | |||
3hxi | [A][a] | [A][a] | [A][a] | 1.8 | GTG:7-METHYL-GUANOSINE-5___sq___-TRIPHOSPHATE-5___sq___-GUANOSINE | |||
3m93 | [A][a] | [A][a] | [A][a] | 2.9 | M7G:7N-METHYL-8-HYDROGUANOSINE-5___sq___-DIPHOSPHATE | |||
3m94 | [A][a] | [A][a] | [A][a] | 2.05 | ACE:ACETYL GROUP M7M:N,N,7-TRIMETHYLGUANOSINE 5___sq___-(TRIHYDROGEN DIPHOSPHATE) | |||
3tf2 | [A] | [A] | [A] | 2.1 | UNX:UNKNOWN ATOM OR ION | |||
3u7x | [A][a] | [A][a] | [A][a] | 2.1 | SO4:SULFATE ION UNX:UNKNOWN ATOM OR ION | |||
4axg | [AB] | [AB] | [AB] | 2.8 | ||||
4aza | [A][a] | [A][a] | [A][a] | 2.16 | ACE:ACETYL GROUP MGO:[[(2R,3S,4R,5R)-5-(6-AMINO-3-METHYL-4-OXO-5H-IMIDAZO[4,5-C]PYRIDIN-1-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL]PHOSPHONO HYDROGEN PHOSPHATE NH2:AMINO GROUP | |||
4b6u | [A] | [A] | [A] | NOTAPPLICABLE. | M7G:7N-METHYL-8-HYDROGUANOSINE-5___sq___-DIPHOSPHATE | |||
4b6v | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
4bea | [A][a] | [A][a] | [A][a] | 2.57 | MK8:2-METHYL-L-NORLEUCINE NME:METHYLAMINE | |||
4dt6 | [A] | [A] | [A] | 2.6 | 6LI:7-[2-(4-CHLOROPHENOXY)ETHYL]GUANOSINE 5___sq___-(DIHYDROGENPHOSPHATE) EDO:1,2-ETHANEDIOL GOL:GLYCEROL | |||
4dum | [A] | [A] | [A] | 2.95 | EDO:1,2-ETHANEDIOL HLI:(4-{7-[2-(4-CHLOROPHENOXY)ETHYL]-2-(METHYLAMINO)-6-OXO-6,7-DIHYDRO-1H-PURIN-8-YL}PHENYL)PHOSPHONIC ACID | |||
4tpw | [A] | [A] | [A] | 1.5 | 33R:(2E)-2-{2-[4-(3,4-DICHLOROPHENYL)-1,3-THIAZOL-2-YL]HYDRAZINYLIDENE}-3-(2-NITROPHENYL)PROPANOIC ACID MES:2-(N-MORPHOLINO)-ETHANESULFONIC ACID MGP:7-METHYL-GUANOSINE-5___sq___-TRIPHOSPHATE | |||
4tqb | [A] | [A] | [A] | 1.59 | 34K:(2E)-2-{2-[4-(4-BROMOPHENYL)-1,3-THIAZOL-2-YL]HYDRAZINYLIDENE}-3-(2-NITROPHENYL)PROPANOIC ACID MES:2-(N-MORPHOLINO)-ETHANESULFONIC ACID MGT:7N-METHYL-8-HYDROGUANOSINE-5___sq___-TRIPHOSPHATE | |||
4tqc | [A] | [A] | [A] | 1.8 | 34J:(2S)-3-(4-AMINO-3-NITROPHENYL)-2-{2-[4-(3,4-DICHLOROPHENYL)-1,3-THIAZOL-2-YL]HYDRAZINYL}PROPANOICACID M7G:7N-METHYL-8-HYDROGUANOSINE-5___sq___-DIPHOSPHATE | |||
4ue8 | [AB] | [AB] | [AB] | 1.1 | NA:SODIUM ION P4G:1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE | |||
4ue9 | [AB] | [AB] | [AB] | 2.15 | ||||
4uea | [AB] | [AB] | [AB] | 2.62 | ||||
4ueb | [AB] | [AB] | [AB] | 2.52 | ||||
4uec | [AB] | [AB] | [AB] | 2.4 | MGT:7N-METHYL-8-HYDROGUANOSINE-5___sq___-TRIPHOSPHATE | |||
4ued | [AB] | [AB] | [AB] | 1.75 | ||||
5abu | [AB] | [AB] | [AB] | 2.16 | CL:CHLORIDE ION GTG:7-METHYL-GUANOSINE-5___sq___-TRIPHOSPHATE-5___sq___-GUANOSINE | |||
5abv | [AB] | [AB] | [AB] | 2.13 | ||||
5abx | [AB] | [AB] | [AB] | 1.66 | CL:CHLORIDE ION MGP:7-METHYL-GUANOSINE-5___sq___-TRIPHOSPHATE ZN:ZINC ION | |||
5aby | [AB] | [AB] | [AB] | 1.95 | GOL:GLYCEROL MG:MAGNESIUM ION | |||
5bxv | [AB] | [AB] | [AB] | 2.1 | MGP:7-METHYL-GUANOSINE-5___sq___-TRIPHOSPHATE | |||
5ehc | [A][a] | [A][a] | [A][a] | 2.4 | 5NX:3-[[(2~{R},3~{S},4~{R},5~{R})-5-[2-AZANYL-7-[(3-CHLOROPHENYL)METHYL]-6-OXIDANYLIDENE-1~{H}-PURIN-7-IUM-9-YL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYLAMINO]-4-OXIDANYL-CYCLOBUT-3-ENE-1,2-DIONE | |||
5ei3 | [A][a] | [A][a] | [A][a] | 1.71 | 5O8:~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-[2-AZANYL-6-OXIDANYLIDENE-7-(PHENYLMETHYL)-1~{H}-PURIN-7-IUM-9-YL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL]-1,1,1-TRIS(FLUORANYL)METHANESULFONAMIDE SO4:SULFATE ION | |||
5eir | [A][a] | [A][a] | [A][a] | 2.69 | 5O8:~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-[2-AZANYL-6-OXIDANYLIDENE-7-(PHENYLMETHYL)-1~{H}-PURIN-7-IUM-9-YL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL]-1,1,1-TRIS(FLUORANYL)METHANESULFONAMIDE SO4:SULFATE ION | |||
5ekv | [A][a] | [A][a] | [A][a] | 3.61 | 5PQ:3-[[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-7-METHYL-6-OXIDANYLIDENE-1~{H}-PURIN-7-IUM-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYLAMINO]-4-OXIDANYL-CYCLOBUT-3-ENE-1,2-DIONE | |||
5gw6 | [A] | [A] | [A] | 1.97 | GOL:GLYCEROL | |||
5j5o | [A] | [A] | [A] | 1.87 | 6G0:5___sq___-O-[(R)-HYDROXY{[(R)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]OXY}PHOSPHORYL]-7-METHYLGUANOSINE GOL:GLYCEROL | |||
5j5y | [A] | [A] | [A] | 1.75 | 6G6:2-AMINO-9-{5-O-[(R)-{[(S)-{DICHLORO[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]METHYL}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]-2-O-METHYL-BETA-D-RIBOFURANOSYL}-7-METHYL-9H-PURIN-7-IUM-6-OLATE GOL:GLYCEROL | |||
5m7v | [A] | [A] | [A] | 1.74 | GOL:GLYCEROL WZO:[(2~{R},3~{R},4~{R},5~{R})-5-(2-AZANYL-7-METHYL-6-OXIDANYLIDENE-1~{H}-PURIN-7-IUM-9-YL)-4-METHOXY-3-OXIDANYL-OXOLAN-2-YL]METHYL [PHOSPHONOOXY(SULFANYL)PHOSPHORYL] HYDROGEN PHOSPHATE | |||
5m7w | [A] | [A] | [A] | 1.97 | GOL:GLYCEROL WZO:[(2~{R},3~{R},4~{R},5~{R})-5-(2-AZANYL-7-METHYL-6-OXIDANYLIDENE-1~{H}-PURIN-7-IUM-9-YL)-4-METHOXY-3-OXIDANYL-OXOLAN-2-YL]METHYL [PHOSPHONOOXY(SULFANYL)PHOSPHORYL] HYDROGEN PHOSPHATE | |||
5m7x | [A] | [A] | [A] | 1.68 | GOL:GLYCEROL RSE:[(2~{R},3~{R},4~{R},5~{R})-5-(2-AZANYL-7-METHYL-6-OXIDANYLIDENE-1~{H}-PURIN-7-IUM-9-YL)-4-METHOXY-3-OXIDANYL-OXOLAN-2-YL]METHYL [PHOSPHONOOXY(SELANYL)PHOSPHORYL] HYDROGEN PHOSPHATE | |||
5m7z | [A] | [A] | [A] | 1.69 | 7LO:[[[(2~{R},3~{R},4~{R},5~{R})-5-(2-AZANYL-7-METHYL-6-OXIDANYL-PURIN-7-IUM-9-YL)-4-METHOXY-3-OXIDANYL-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-SELANYL-PHOSPHORYL] [(2~{R},3~{S},4~{R})-5-(2-AZANYL-6-OXIDANYLIDENE-1~{H}-PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL HYDROGEN PHOSPHATE CL:CHLORIDE ION GOL:GLYCEROL | |||
5m80 | [A] | [A] | [A] | 2.12 | 7L2:[[[(3~{A}~{R},4~{R},6~{R},6~{A}~{R})-4-(2-AZANYL-7-METHYL-6-OXIDANYLIDENE-1~{H}-PURIN-7-IUM-9-YL)-2,2-DIMETHYL-3~{A},4,6,6~{A}-TETRAHYDROFURO[3,4-D][1,3]DIOXOL-6-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-SULFANYL-PHOSPHORYL] [(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6-OXIDANYLIDENE-3~{H}-PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL HYDROGEN PHOSPHATE GOL:GLYCEROL | |||
5m81 | [A] | [A] | [A] | 1.9 | 7L2:[[[(3~{A}~{R},4~{R},6~{R},6~{A}~{R})-4-(2-AZANYL-7-METHYL-6-OXIDANYLIDENE-1~{H}-PURIN-7-IUM-9-YL)-2,2-DIMETHYL-3~{A},4,6,6~{A}-TETRAHYDROFURO[3,4-D][1,3]DIOXOL-6-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-SULFANYL-PHOSPHORYL] [(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6-OXIDANYLIDENE-3~{H}-PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL HYDROGEN PHOSPHATE GOL:GLYCEROL | |||
5m83 | [A] | [A] | [A] | 1.86 | GOL:GLYCEROL YDZ:[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-SULFANYL-PHOSPHORYL] [(2~{R},3~{R},4~{R},5~{R})-5-(2-AZANYL-7-METHYL-6-OXIDANYL-PURIN-7-IUM-9-YL)-4-METHOXY-3-OXIDANYL-OXOLAN-2-YL]METHYLHYDROGEN PHOSPHATE | |||
5m84 | [A] | [A] | [A] | 1.85 | GOL:GLYCEROL YDZ:[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-SULFANYL-PHOSPHORYL] [(2~{R},3~{R},4~{R},5~{R})-5-(2-AZANYL-7-METHYL-6-OXIDANYL-PURIN-7-IUM-9-YL)-4-METHOXY-3-OXIDANYL-OXOLAN-2-YL]METHYLHYDROGEN PHOSPHATE | |||
5me5 | [AB] | [AB] | [AB] | 1.9 | SO4:SULFATE ION | |||
5me6 | [A] | [A] | [A] | 2.9 | M7G:7N-METHYL-8-HYDROGUANOSINE-5___sq___-DIPHOSPHATE | |||
5me7 | [A] | [A] | [A] | 2.2 | GOL:GLYCEROL | |||
5nvk | [AB] | [AB] | [AB] | 2.9 | ||||
5nvl | [AB] | [AB] | [AB] | 2.3 | ||||
5nvm | [AB] | [AB] | [AB] | 2 | PO4:PHOSPHATE ION | |||
5nvn | [AB] | [AB] | [AB] | 1.9 | FMT:FORMIC ACID | |||
5t46 | [AB] | [AB] | [AB] | 1.53 | GOL:GLYCEROL MGP:7-METHYL-GUANOSINE-5___sq___-TRIPHOSPHATE | |||
5t47 | [AB] | [AB] | [AB] | 2.2 | GOL:GLYCEROL | |||
5t48 | [AB] | [AB] | [AB] | 2.19 | MGP:7-METHYL-GUANOSINE-5___sq___-TRIPHOSPHATE | |||
6fbz | [AB] | [AB] | [AB] | 1.5 | MGP:7-METHYL-GUANOSINE-5___sq___-TRIPHOSPHATE | |||
6fc0 | [AB] | [AB] | [AB] | 1.29 |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA